Welcome to TMFunction
Functional Database of Membrane Proteins
 Computational Biology Research Center, AIST, 2008 All Rights Reserved. |
First release: July 2007
Last Update: Sept 2008
Links
We have listed the following links related with TMFunction database
Structures and sequences |
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Protein Data Bank (PDB) |
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PDB-REPRDB: a database of representative protein chains from the PDB |
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Protein Data Bank of Transmembrane proteins |
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Membrane protein structures
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MPtopo: a database of membrane protein topology |
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PDBsum |
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UniProt |
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Functions and genomes |
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Transport Classification Database |
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OCA: a browser-database for protein structure/function |
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Prosite: Database of protein domains, families and functional sites |
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Pfam: collection of protein families |
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Ion channels database |
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The mitochondria database |
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Orientations of proteins in membranes database |
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GPCRDB: Information system for G-protein coupled receptors |
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SEVENS: Comprehensive collection of human 7TM receptors |
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GENIUS II: Database System for Assigning Genome ORFs to 3D structures |
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GRIFFIN: G-Protein and Receptor Interaction Feature Finding INstrument |
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ARAMEMNON: Database for Arabidopsis Integral Membrane Proteins |
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TMBETA-GENOME: database for annotated beta barrel membrane proteins in genomic sequences |
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Transmembrane helix prediction |
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HMMTOP |
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TMPro |
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PONGO |
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TMHMM |
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SOSUI |
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Transmembrane strand prediction and discrimination |
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TMBETA-DISC: TMStrand discrimination |
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TMBETA-SVM: TMStrand discrimination |
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TMBETA-RBF: TMStrand discrimination |
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TMBETA-NET: TMStrand prediction |
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ProfTMB: TMStrand prediction |
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Transfold: structure and residue contacts in TMBs |
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TMB-Hunt |
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PRED-TMBB |
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TBB-Pred |
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Literature |
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PUBMED
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